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Application of Metagenomics and Artificial Intelligence for Pathogen Characterization in Domestic Animals and Epizootic Prediction: A Systematic Review and Meta-Analysis

  • Amadou Dicko
  • , Seydou Golo Barro
  • , N. Siourimè Somda
  • , Salif Sombie
  • , Ousseni Bandaogo
  • , Germain Sanou
  • , Mathew D Esona
  • , Juste Isidore O. Bonkoungou

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Abstract

Sub-Saharan Africa suffers devastating animal health losses exceeding $20 billion each year. By combining metagenomics with artificial intelligence (AI), a promising path emerges for faster diagnostics and proactive disease prediction. Our PRISMA-guided review of 1,225 studies reveals that metagenomics achieves 94.2% diagnostic sensitivity (compared to 67.3% with conventional methods), while AI dramatically shortens turnaround from 48-72h to just 4-8h, offering a valuable 14-18 day early warning window for epizootics.

Original languageEnglish
Title of host publicationOpening the Personal Gate between Technology and Health Care - Proceedings of MIE 2026
EditorsMaria Hagglund, Lars Lindskold, Lenka Lhotska, Sara Marceglia, Enea Parimbelli, Lucia Sacchi, Paolo Soda, Lacramioara Stoicu-Tivadar, Pierangelo Veltri, Patrizia Vizza, Mauro Giacomini, Jaime Delgado, Theodoros N. Arvanitis, Elisavet Andrikopoulou, Arriel Benis, Gabriella Balestra, Riccardo Bellazzi, Parisis G. Gallos, Roberto Gatta, Daniele Roberto Giacobbe, Noemi Giordano
PublisherIOS Press BV
Pages2095-2096
Number of pages2
ISBN (Electronic)9781643686615
DOIs
Publication statusPublished - 21 May 2026
Externally publishedYes
Event36th Medical Informatics Europe Conference, MIE 2026 - Genoa, Italy
Duration: 25 May 2026 → 28 May 2026

Publication series

NameStudies in Health Technology and Informatics
Volume336
ISSN (Print)0926-9630
ISSN (Electronic)1879-8365

Conference

Conference36th Medical Informatics Europe Conference, MIE 2026
Country/TerritoryItaly
CityGenoa
Period25/May/26 → 28/May/26

Keywords

  • Metagenomics
  • animal diseases
  • artificial intelligence

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